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Learning Biophysically-Motivated Parameters for Alpha Helix Prediction
Blaise Gassend, Charles W. O'Donnell, William Thies, Andrew Lee, Marten van Dijk, Srinivas Devadas
BMC Bioinformatics: Volume 8 (Supplement 5) p. S3
May 24, 2007
Predicting Secondary Structure of All-Helical Proteins Using Hidden Markov Support Vector Machines (slides)
Blaise Gassend, Charles W. O'Donnell, William Thies, Andrew Lee, Marten van Dijk, Srinivas Devadas
PRIB 2006: Proceedings of the 2006 Workshop on Pattern Recognition in Bioinformatics, Hong Kong, China
August 20, 2006
Secondary Structure Prediction of All-Helical Proteins Using Hidden Markov Support Vector Machines
Blaise Gassend, Charles W. O'Donnell, William Thies, Andrew Lee, Marten van Dijk, Srinivas Devadas
MIT CSAIL Technical Report 1003 (MIT-LCS-TR-1003)
October 6, 2005

Talks, Abstracts, Miscellanea


Modeling Ensembles of Transmembrane β-barrel Proteins
Jérôme Waldispühl**, Charles W. O'Donnell**, Nathan Palmer, Srinivas Devadas, Peter Clote, Bonnie Berger (**authors equally contributed)
Poster at ISMB/ECCB 2007: 15th Annual Internation Conference on Intelligent Systems for Molecular Biology & 6th European Conference on Computational Biology, Vienna, Austria
July 2007
Learning Biophysically-Motivated Parameters for Alpha Helix Prediction (abstract)
Blaise Gassend, Charles W. O'Donnell, William Thies, Andrew Lee, Marten van Dijk, Srinivas Devadas
Poster at RECOMB 2006: 10th Annual International Conference on Research in Computational Molecular Biology, Venice Lido, Italy
January 20, 2006
Protein Secondary Structure Prediction using Support Vector Machine Determined Cost Functions
Blaise Gassend (presenter), Charles W. O'Donnell, William Thies, Andrew Lee, Jérôme Waldispühl, Marten van Dijk, Srinivas Devadas
Presented at the Bioinformatics: algorithms, structures and statistics workshop at Ecole Polytechnique (COLLIX 2005)
December 13, 2005
Protein Structure Prediction Using Dynamic Programming and Structured Output Support Vector Machines
Blaise Gassend, Charles W. O'Donnell, William Thies, Christopher Batten, G. Edward Suh, Dwaine Clarke, Srinivas Devadas
MIT CSAIL Research Abstract 2005
April, 2005



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